Assembly
ASM3091365v1
BioProject PRJNA1006789 · BioSample SAMN37052149
GENOME-RESOLVED EVIDENCE
GCA_030913655.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3893327 bp · GC 29.000%
Completeness 98.760% · contamination 0.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 3 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRBU49_15100 | WMJ80132.1 | OG0000061 | CP133189.1:3216837–3218186 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. MB40-C1] |
| ldhRBU49_09665 | WMJ79159.1 | OG0000131 | CP133189.1:2065794–2066741 + | L-lactate dehydrogenase [Clostridium sp. MB40-C1] |
| accBRBU49_09785 | WMJ79180.1 | OG0000212 | CP133189.1:2095713–2096192 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. MB40-C1] |
| accBRBU49_15090 | WMJ80130.1 | OG0000212 | CP133189.1:3215857–3216348 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. MB40-C1] |
| hbdRBU49_07940 | WMJ82171.1 | OG0000229 | CP133189.1:1688958–1689806 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. MB40-C1] |
| hbdRBU49_12700 | WMJ82461.1 | OG0000229 | CP133189.1:2710007–2710855 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. MB40-C1] |
| thlRBU49_07935 | WMJ82170.1 | OG0000234 | CP133189.1:1687686–1688870 - | acetyl-CoA C-acetyltransferase [Clostridium sp. MB40-C1] |
| thlRBU49_12465 | WMJ79677.1 | OG0000234 | CP133189.1:2658260–2659444 - | acetyl-CoA C-acetyltransferase [Clostridium sp. MB40-C1] |
| fabZRBU49_15095 | WMJ80131.1 | OG0000785 | CP133189.1:3216363–3216791 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. MB40-C1] |
| adhERBU49_13480 | WMJ79868.1 | OG0001124 | CP133189.1:2892893–2895490 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. MB40-C1] |
| adhERBU49_14195 | WMJ80003.1 | OG0001124 | CP133189.1:3053321–3055918 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. MB40-C1] |
| lctPRBU49_00960 | WMJ80848.1 | OG0001228 | CP133189.1:235955–237478 + | L-lactate permease [Clostridium sp. MB40-C1] |
| lctPRBU49_00985 | WMJ80853.1 | OG0001228 | CP133189.1:242720–244375 + | L-lactate permease [Clostridium sp. MB40-C1] |
| lctPRBU49_01015 | WMJ80859.1 | OG0001228 | CP133189.1:249178–250833 + | L-lactate permease [Clostridium sp. MB40-C1] |
| rnfARBU49_00815 | WMJ80819.1 | OG0001328 | CP133189.1:199161–199736 + | electron transport complex protein RnfA [Clostridium sp. MB40-C1] |
| crtRBU49_12160 | WMJ79623.1 | OG0001394 | CP133189.1:2595354–2596139 - | short-chain-enoyl-CoA hydratase [Clostridium sp. MB40-C1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.