Assembly
ASM3091544v1
BioProject PRJNA1005785 · BioSample SAMN36999285
GENOME-RESOLVED EVIDENCE
GCA_030915445.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5878538 bp · GC 31.500%
Completeness 87.990% · contamination 4.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRCG18_06845 | WML36391.1 | OG0000061 | CP133264.1:1380176–1381522 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. OS1-26] |
| ldhRCG18_20455 | WML33691.1 | OG0000131 | CP133264.1:4131599–4132546 - | L-lactate dehydrogenase [Clostridium sp. OS1-26] |
| accBRCG18_06855 | WML36393.1 | OG0000212 | CP133264.1:1382083–1382604 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. OS1-26] |
| hbdRCG18_11260 | WML37136.1 | OG0000229 | CP133264.1:2302313–2303158 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. OS1-26] |
| hbdRCG18_24815 | WML34469.1 | OG0000229 | CP133264.1:5001485–5002333 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. OS1-26] |
| thlRCG18_11265 | WML37137.1 | OG0000234 | CP133264.1:2303277–2304455 + | acetyl-CoA C-acetyltransferase [Clostridium sp. OS1-26] |
| thlRCG18_12615 | WML37377.1 | OG0000234 | CP133264.1:2583260–2584438 + | acetyl-CoA C-acetyltransferase [Clostridium sp. OS1-26] |
| fabZRCG18_06850 | WML36392.1 | OG0000785 | CP133264.1:1381609–1382055 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. OS1-26] |
| adhERCG18_09650 | WML36857.1 | OG0001124 | CP133264.1:1936723–1939353 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. OS1-26] |
| adhERCG18_12160 | WML37297.1 | OG0001124 | CP133264.1:2492152–2494758 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. OS1-26] |
| lctPRCG18_22270 | WML34014.1 | OG0001228 | CP133264.1:4492274–4493782 - | L-lactate permease [Clostridium sp. OS1-26] |
| crtRCG18_24835 | WML34472.1 | OG0001394 | CP133264.1:5005453–5006235 - | short-chain-enoyl-CoA hydratase [Clostridium sp. OS1-26] |
| crtRCG18_25490 | WML37875.1 | OG0001394 | CP133264.1:5144053–5144832 - | short-chain-enoyl-CoA hydratase [Clostridium sp. OS1-26] |
| crtRCG18_11255 | WML37135.1 | OG0001639 | CP133264.1:2301362–2302141 + | short-chain-enoyl-CoA hydratase [Clostridium sp. OS1-26] |
| fabZRCG18_23015 | WML34142.1 | OG0018560 | CP133264.1:4645190–4645600 - | 3-hydroxyacyl-ACP dehydratase FabZ family protein [Clostridium sp. OS1-26] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.