Assembly
ASM3312788v1
BioProject PRJDB14332 · BioSample SAMD00534305
GENOME-RESOLVED EVIDENCE
GCA_033127885.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2839476 bp · GC 28.500%
Completeness 99.380% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK134307016_19940 | BDR65060.1 | OG0000034 | AP026804.1:2099328–2100470 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK134307016_25760 | BDR65642.1 | OG0000061 | AP026804.1:2730440–2731780 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K134307016_19070 | BDR64973.1 | OG0000131 | AP026804.1:2012215–2013165 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBK134307016_04780 | BDR63544.1 | OG0000212 | AP026804.1:552848–553174 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdK134307016_22740 | BDR65340.1 | OG0000229 | AP026804.1:2414609–2415457 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK134307016_01460 | BDR63212.1 | OG0000234 | AP026804.1:170330–171505 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK134307016_08030 | BDR63869.1 | OG0001228 | AP026804.1:915611–917131 + | L-lactate permease [Clostridium tetani] |
| crtK134307016_22780 | BDR65344.1 | OG0001394 | AP026804.1:2418468–2419250 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK134307016_03090 | BDR63375.1 | OG0001639 | AP026804.1:347390–348166 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK134307016_05240 | BDR63590.1 | OG0003747 | AP026804.1:601690–602109 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.