Assembly
ASM3312802v1
BioProject PRJDB14332 · BioSample SAMD00534321
GENOME-RESOLVED EVIDENCE
GCA_033128025.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2910351 bp · GC 29.000%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK144312032_20940 | BDR67866.1 | OG0000034 | AP026806.1:2165138–2166280 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK144312032_26910 | BDR68463.1 | OG0000061 | AP026806.1:2807661–2809001 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K144312032_20060 | BDR67778.1 | OG0000131 | AP026806.1:2077903–2078853 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| hbdK144312032_23910 | BDR68163.1 | OG0000229 | AP026806.1:2493664–2494512 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK144312032_01460 | BDR65918.1 | OG0000234 | AP026806.1:177569–178744 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK144312032_08150 | BDR66587.1 | OG0001228 | AP026806.1:925136–926656 + | L-lactate permease [Clostridium tetani] |
| crtK144312032_23950 | BDR68167.1 | OG0001394 | AP026806.1:2497523–2498305 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK144312032_03110 | BDR66083.1 | OG0001639 | AP026806.1:363210–363986 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK144312032_05320 | BDR66304.1 | OG0003747 | AP026806.1:607601–608020 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.