Assembly
ASM3312812v1
BioProject PRJDB14332 · BioSample SAMD00534326
GENOME-RESOLVED EVIDENCE
GCA_033128125.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2853704 bp · GC 28.500%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK144313037_19080 | BDR70496.1 | OG0000034 | AP026808.1:2057682–2058824 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK144313037_24980 | BDR71086.1 | OG0000061 | AP026808.1:2693507–2694847 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K144313037_18210 | BDR70409.1 | OG0000131 | AP026808.1:1970560–1971510 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBK144313037_04750 | BDR69063.1 | OG0000212 | AP026808.1:552966–553292 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdK144313037_21830 | BDR70771.1 | OG0000229 | AP026808.1:2365582–2366430 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK144313037_01450 | BDR68733.1 | OG0000234 | AP026808.1:176049–177224 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK144313037_08040 | BDR69392.1 | OG0001228 | AP026808.1:917029–918549 + | L-lactate permease [Clostridium tetani] |
| crtK144313037_21870 | BDR70775.1 | OG0001394 | AP026808.1:2369441–2370223 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK144313037_03070 | BDR68895.1 | OG0001639 | AP026808.1:356305–357081 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK144313037_05210 | BDR69109.1 | OG0003747 | AP026808.1:601808–602227 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.