Assembly
ASM3312818v1
BioProject PRJDB14332 · BioSample SAMD00534330
GENOME-RESOLVED EVIDENCE
GCA_033128185.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3070777 bp · GC 28.500%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK144316041_19990 | BDR73291.1 | OG0000034 | AP026811.1:2111283–2112425 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK144316041_27320 | BDR74024.1 | OG0000061 | AP026811.1:2822324–2823664 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K144316041_19100 | BDR73202.1 | OG0000131 | AP026811.1:2024039–2024989 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBK144316041_04660 | BDR71758.1 | OG0000212 | AP026811.1:541103–541429 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdK144316041_24290 | BDR73721.1 | OG0000229 | AP026811.1:2506810–2507658 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK144316041_01470 | BDR71439.1 | OG0000234 | AP026811.1:171819–172994 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK144316041_07850 | BDR72077.1 | OG0001228 | AP026811.1:894015–895535 + | L-lactate permease [Clostridium tetani] |
| crtK144316041_24330 | BDR73725.1 | OG0001394 | AP026811.1:2510669–2511451 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK144316041_03020 | BDR71594.1 | OG0001639 | AP026811.1:342637–343413 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK144316041_05130 | BDR71805.1 | OG0003747 | AP026811.1:589872–590291 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.