Assembly
ASM3312820v1
BioProject PRJDB14332 · BioSample SAMD00534302
GENOME-RESOLVED EVIDENCE
GCA_033128205.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2896423 bp · GC 28.500%
Completeness 99.380% · contamination 0.780%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK154306013_19650 | BDR76305.1 | OG0000034 | AP026814.1:2110941–2112083 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK154306013_25620 | BDR76902.1 | OG0000061 | AP026814.1:2760108–2761448 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K154306013_18780 | BDR76218.1 | OG0000131 | AP026814.1:2023815–2024765 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| hbdK154306013_22530 | BDR76593.1 | OG0000229 | AP026814.1:2434923–2435771 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK154306013_01440 | BDR74484.1 | OG0000234 | AP026814.1:176069–177244 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK154306013_08010 | BDR75141.1 | OG0001228 | AP026814.1:921584–923104 + | L-lactate permease [Clostridium tetani] |
| crtK154306013_22570 | BDR76597.1 | OG0001394 | AP026814.1:2438782–2439564 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK154306013_03160 | BDR74656.1 | OG0001639 | AP026814.1:363239–364015 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.