Assembly
ASM3312822v1
BioProject PRJDB14332 · BioSample SAMD00534306
GENOME-RESOLVED EVIDENCE
GCA_033128225.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2818420 bp · GC 28.500%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK154307017_19870 | BDR79054.1 | OG0000034 | AP026816.1:2088504–2089646 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK154307017_25600 | BDR79627.1 | OG0000061 | AP026816.1:2709994–2711334 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K154307017_19000 | BDR78967.1 | OG0000131 | AP026816.1:2001392–2002342 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBK154307017_04720 | BDR77539.1 | OG0000212 | AP026816.1:547366–547692 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdK154307017_22600 | BDR79327.1 | OG0000229 | AP026816.1:2396193–2397041 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK154307017_01460 | BDR77213.1 | OG0000234 | AP026816.1:176051–177226 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK154307017_07950 | BDR77862.1 | OG0001228 | AP026816.1:906390–907910 + | L-lactate permease [Clostridium tetani] |
| crtK154307017_22640 | BDR79331.1 | OG0001394 | AP026816.1:2400052–2400834 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK154307017_03060 | BDR77373.1 | OG0001639 | AP026816.1:354667–355443 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK154307017_05190 | BDR77586.1 | OG0003747 | AP026816.1:597690–598109 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.