Assembly
ASM3312824v1
BioProject PRJDB14332 · BioSample SAMD00534317
GENOME-RESOLVED EVIDENCE
GCA_033128245.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2918434 bp · GC 29.000%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK234311028_20470 | BDR81801.1 | OG0000034 | AP026818.1:2132911–2134053 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK234311028_26400 | BDR82394.1 | OG0000061 | AP026818.1:2773254–2774594 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K234311028_19590 | BDR81713.1 | OG0000131 | AP026818.1:2045679–2046629 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| hbdK234311028_23390 | BDR82093.1 | OG0000229 | AP026818.1:2458715–2459563 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK234311028_01480 | BDR79902.1 | OG0000234 | AP026818.1:177509–178684 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK234311028_08050 | BDR80559.1 | OG0001228 | AP026818.1:912235–913755 + | L-lactate permease [Clostridium tetani] |
| crtK234311028_23430 | BDR82097.1 | OG0001394 | AP026818.1:2462574–2463356 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK234311028_03150 | BDR80069.1 | OG0001639 | AP026818.1:363644–364420 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK234311028_05260 | BDR80280.1 | OG0003747 | AP026818.1:600684–601103 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.