Assembly
ASM3312826v1
BioProject PRJDB14332 · BioSample SAMD00534315
GENOME-RESOLVED EVIDENCE
GCA_033128265.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2930333 bp · GC 28.500%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdK254310026_20180 | BDR84607.1 | OG0000034 | AP026821.1:2137644–2138786 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCK254310026_26750 | BDR85264.1 | OG0000061 | AP026821.1:2822884–2824224 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1K254310026_19310 | BDR84520.1 | OG0000131 | AP026821.1:2050556–2051506 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBK254310026_04760 | BDR83065.1 | OG0000212 | AP026821.1:554407–554733 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdK254310026_23640 | BDR84953.1 | OG0000229 | AP026821.1:2495578–2496426 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK254310026_01440 | BDR82733.1 | OG0000234 | AP026821.1:176068–177243 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAK254310026_07980 | BDR83387.1 | OG0001228 | AP026821.1:915022–916542 + | L-lactate permease [Clostridium tetani] |
| crtK254310026_23680 | BDR84957.1 | OG0001394 | AP026821.1:2499437–2500219 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK254310026_03060 | BDR82895.1 | OG0001639 | AP026821.1:357924–358700 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJK254310026_05240 | BDR83113.1 | OG0003747 | AP026821.1:606204–606623 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.