Assembly
ASM3312828v1
BioProject PRJDB14332 · BioSample SAMD00534442
GENOME-RESOLVED EVIDENCE
GCA_033128285.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2923769 bp · GC 28.500%
Completeness 97.080% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdN071400001_20280 | BDR87420.1 | OG0000034 | AP026823.1:2125019–2126161 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| accCN071400001_26260 | BDR88018.1 | OG0000061 | AP026823.1:2769416–2770756 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldh1N071400001_19390 | BDR87331.1 | OG0000131 | AP026823.1:2037882–2038832 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| accBN071400001_04870 | BDR85879.1 | OG0000212 | AP026823.1:561606–561932 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdN071400001_23200 | BDR87712.1 | OG0000229 | AP026823.1:2448193–2449041 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlN071400001_01480 | BDR85540.1 | OG0000234 | AP026823.1:176007–177182 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAN071400001_08880 | BDR86280.1 | OG0001228 | AP026823.1:968448–969968 + | L-lactate permease [Clostridium tetani] |
| crtN071400001_23240 | BDR87716.1 | OG0001394 | AP026823.1:2452052–2452834 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtN071400001_03100 | BDR85702.1 | OG0001639 | AP026823.1:351133–351909 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.