Assembly
ASM3312830v1
BioProject PRJDB14332 · BioSample SAMD00534443
GENOME-RESOLVED EVIDENCE
GCA_033128305.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2819619 bp · GC 29.000%
Completeness 98.140% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdN072000002_19840 | BDR90183.1 | OG0000034 | AP026825.1:2080600–2081742 - | butyryl-CoA dehydrogenase [Clostridium tetani] |
| ldh1N072000002_18960 | BDR90095.1 | OG0000131 | AP026825.1:1993368–1994318 - | L-lactate dehydrogenase 1 [Clostridium tetani] |
| hbdN072000002_22840 | BDR90483.1 | OG0000229 | AP026825.1:2405982–2406830 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlN072000002_01490 | BDR88348.1 | OG0000234 | AP026825.1:177542–178717 + | acetyl-CoA acetyltransferase [Clostridium tetani] |
| glcAN072000002_08160 | BDR89015.1 | OG0001228 | AP026825.1:911830–913350 + | L-lactate permease [Clostridium tetani] |
| crtN072000002_22880 | BDR90487.1 | OG0001394 | AP026825.1:2409841–2410623 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtN072000002_03170 | BDR88516.1 | OG0001639 | AP026825.1:363506–364282 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| phaJN072000002_05310 | BDR88730.1 | OG0003747 | AP026825.1:600523–600942 + | (R)-specific enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.