Assembly
ASM3408022v1
BioProject PRJNA1042855 · BioSample SAMN38323294
GENOME-RESOLVED EVIDENCE
GCA_034080225.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3414717 bp · GC 28.500%
Completeness 96.450% · contamination 4.290%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCSK065_07180 | WPQ47155.1 | OG0000061 | CP139200.1:1602010–1603362 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhSK065_00670 | WPQ45888.1 | OG0000131 | CP139200.1:151171–152124 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBSK065_07170 | WPQ47153.1 | OG0000212 | CP139200.1:1601085–1601576 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdSK065_13265 | WPQ45427.1 | OG0000229 | CP139200.1:2941543–2942391 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlSK065_12665 | WPQ45332.1 | OG0000234 | CP139200.1:2823650–2824828 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZSK065_07175 | WPQ47154.1 | OG0000785 | CP139200.1:1601579–1601998 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhESK065_14565 | WPQ45658.1 | OG0001124 | CP139200.1:3199278–3201875 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPSK065_01705 | WPQ46081.1 | OG0001228 | CP139200.1:390342–391865 + | L-lactate permease [Clostridium perfringens] |
| crtSK065_13285 | WPQ45431.1 | OG0001394 | CP139200.1:2945518–2946300 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtSK065_00630 | WPQ45880.1 | OG0001639 | CP139200.1:140518–141294 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.