Assembly
ASM3442464v1
BioProject PRJNA1047486 · BioSample SAMN38562714
GENOME-RESOLVED EVIDENCE
GCA_034424645.1
Bordetella avium · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3721798 bp · GC 61.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_012418213.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 346.400 / 0.98900 | Bridge orthogroup OG0001120 |
| accBWP_012418636.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 133.900 / 0.98100 | Annotation: gene_symbol |
| accCWP_012418635.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 585.300 / 0.99600 | Annotation: gene_symbol |
| accDWP_012416788.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 318.800 / 0.89800 | Bridge orthogroup OG0000844 |
| coatWP_114851833.1 · CoA transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 209.600 / 0.94000 | Annotation: specific_product_name |
| coatWP_012416010.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 166.000 / 0.89900 | Annotation: specific_product_name |
| fabFWP_039051629.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 636.300 / 0.98800 | Annotation: gene_symbol |
| fabGWP_114851827.1 · 3-oxoacyl-ACP reductase FabG | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 246.500 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_114852227.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 382.200 / 0.97700 | Annotation: gene_symbol |
| fabIWP_012416559.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 308.300 / 0.96500 | Annotation: gene_symbol |
| fabZWP_012417414.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 122.500 / 0.76000 | Bridge orthogroup OG0000074 |
| hbdWP_114851634.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 295.500 / 0.98600 | Bridge orthogroup OG0000153 |
| hbdWP_114851609.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 246.300 / 0.98200 | Bridge orthogroup OG0000153 |
| thlWP_012418135.1 · beta-ketothiolase BktB | High | Approved candidatestrong profile and bridge orthogroup support | 488.200 / 0.99700 | Bridge orthogroup OG0000010 |
| thlWP_114852124.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 460.200 / 0.98700 | Bridge orthogroup OG0000010 |
| thlWP_114851954.1 · 3-oxoadipyl-CoA thiolase | High | Approved candidatestrong profile and bridge orthogroup support | 408.800 / 0.99200 | Bridge orthogroup OG0000010 |
| thlWP_114852330.1 · acetyl-CoA C-acyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 386.600 / 0.99000 | Bridge orthogroup OG0000010 |
| fabGWP_158308706.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 89.800 / 0.99200 | Profile only |
| fabGWP_012417195.1 · SDR family oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 87.200 / 0.79000 | Profile only |
| accCWP_114852099.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 556.300 / 0.98700 | Profile only |
| accCWP_114852125.1 · acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 531.500 / 0.99300 | Profile only |
| bcdWP_012419006.1 · isovaleryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 375.900 / 0.99500 | Profile only |
| bcdWP_114852054.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 375.800 / 0.97900 | Profile only |
| bcdWP_039051761.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 362.900 / 0.99700 | Profile only |
| bcdWP_012418659.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 283.700 / 0.90200 | Profile only |
| bcdWP_012415929.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 279.600 / 0.90000 | Profile only |
| bcdWP_012416305.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 255.000 / 0.98400 | Profile only |
| crtWP_012418859.1 · enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 269.100 / 0.97700 | Annotation: specific_product_name |
| crtWP_114852442.1 · crotonase/enoyl-CoA hydratase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 207.500 / 0.98100 | Annotation: specific_product_name |
| crtWP_114851898.1 · 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.800 / 0.99600 | Profile only |
| crtWP_012418660.1 · enoyl-CoA hydratase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.600 / 0.96500 | Annotation: specific_product_name |
| crtWP_114852056.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 125.900 / 0.90000 | Annotation: specific_product_name |
| crtWP_114851782.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 121.300 / 0.95000 | Annotation: specific_product_name |
| etfAWP_012417046.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 236.400 / 0.94600 | Profile only |
| etfAWP_114852085.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 215.300 / 0.94300 | Profile only |
| fabGWP_114852461.1 · 3-oxoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 221.000 / 0.99600 | Annotation: specific_product_name |
| fabGWP_012416904.1 · 3-ketoacyl-ACP reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.100 / 0.98000 | Bridge orthogroup OG0000008 |
| fabGWP_012415915.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 213.100 / 0.98800 | Bridge orthogroup OG0000008 |
| fabGWP_114852192.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.200 / 0.98400 | Profile only |
| fabGWP_012419022.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.400 / 0.99200 | Profile only |
| fabGWP_012416184.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.000 / 0.98000 | Bridge orthogroup OG0000008 |
| fabGWP_114852264.1 · 3-hydroxybutyrate dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.600 / 0.98800 | Profile only |
| fabGWP_012415965.1 · 3-hydroxybutyrate dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.900 / 0.99600 | Profile only |
| fabGWP_012419021.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.700 / 0.98000 | Profile only |
| fabGWP_114852569.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.600 / 0.97200 | Profile only |
| fabGWP_012418894.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.100 / 0.99200 | Bridge orthogroup OG0000008 |
| fabGWP_012416316.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 159.300 / 0.98000 | Profile only |
| fabGWP_114851633.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.300 / 0.95600 | Profile only |
| fabGWP_211308645.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.200 / 0.97600 | Profile only |
| fabGWP_039051985.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.900 / 0.97200 | Profile only |
| fabGWP_012417621.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 143.900 / 0.89900 | Profile only |
| fabGWP_012417770.1 · 3-hydroxyacyl-CoA dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.800 / 0.98800 | Profile only |
| fabGWP_012416303.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.700 / 0.98800 | Profile only |
| fabGWP_114852452.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 133.900 / 0.98800 | Profile only |
| fabGWP_236824185.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.000 / 0.91500 | Profile only |
| fabGWP_114852389.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 125.800 / 0.97200 | Profile only |
| fabGWP_012416317.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 104.500 / 0.95200 | Profile only |
| fabHWP_114851825.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 273.700 / 0.98800 | Profile only |
| fabKWP_012416466.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 241.900 / 0.96500 | Profile only |
| fabLWP_114852461.1 · 3-oxoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.700 / 0.98400 | Profile only |
| fabLWP_012415915.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.800 / 0.97200 | Profile only |
| fabLWP_012419022.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.400 / 0.97200 | Profile only |
| fabLWP_114851827.1 · 3-oxoacyl-ACP reductase FabG | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.700 / 0.98000 | Profile only |
| fabLWP_012419021.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.900 / 0.98000 | Profile only |
| fabLWP_114852192.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.800 / 0.98000 | Profile only |
| fabLWP_012416184.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.100 / 0.98000 | Profile only |
| fabLWP_114852264.1 · 3-hydroxybutyrate dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.700 / 0.97600 | Profile only |
| fabLWP_012416316.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.200 / 0.98400 | Profile only |
| fabLWP_012416904.1 · 3-ketoacyl-ACP reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.500 / 0.97600 | Profile only |
| fabLWP_012415965.1 · 3-hydroxybutyrate dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.400 / 0.98000 | Profile only |
| fabLWP_012418894.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.800 / 0.98400 | Profile only |
| fabLWP_114852569.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.900 / 0.97600 | Profile only |
| fabLWP_012417621.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 144.700 / 0.89300 | Profile only |
| fabLWP_012416303.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.200 / 0.98800 | Profile only |
| fabLWP_211308645.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.100 / 0.91700 | Profile only |
| fabLWP_114852452.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 137.900 / 0.97200 | Profile only |
| fabLWP_114852389.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 134.700 / 0.98800 | Profile only |
| fabLWP_236824185.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 133.800 / 0.76200 | Profile only |
| fabLWP_114851633.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.400 / 0.96400 | Profile only |
| fabLWP_039051985.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 123.600 / 0.99200 | Profile only |
| fabLWP_012416317.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 108.900 / 0.96000 | Profile only |
| hbdWP_012418831.1 · 3-hydroxyacyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 264.900 / 0.98600 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.