Assembly
ASM3590547v1
BioProject PRJNA934396 · BioSample SAMN33929498
GENOME-RESOLVED EVIDENCE
GCA_035905475.1
Clostridium intestinale · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4686421 bp · GC 30.500%
Completeness 99.380% · contamination 2.070%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 2 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP8F83_04395 | WRY52437.1 | OG0000061 | CP121166.1:867944–869290 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium intestinale] |
| ldhP8F83_04160 | WRY52392.1 | OG0000131 | CP121166.1:818363–819316 + | L-lactate dehydrogenase [Clostridium intestinale] |
| ldhP8F83_05595 | WRY52670.1 | OG0000131 | CP121166.1:1076747–1077736 + | L-lactate dehydrogenase [Clostridium intestinale] |
| ldhP8F83_19615 | WRY50840.1 | OG0000131 | CP121166.1:3846041–3846991 + | L-lactate dehydrogenase [Clostridium intestinale] |
| accBP8F83_04385 | WRY52435.1 | OG0000212 | CP121166.1:867035–867511 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium intestinale] |
| hbdP8F83_15155 | WRY50029.1 | OG0000229 | CP121166.1:2946534–2947382 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium intestinale] |
| thlP8F83_06100 | WRY52767.1 | OG0000234 | CP121166.1:1173113–1174294 + | acetyl-CoA C-acetyltransferase [Clostridium intestinale] |
| thlP8F83_13300 | WRY49700.1 | OG0000234 | CP121166.1:2575492–2576670 - | acetyl-CoA C-acetyltransferase [Clostridium intestinale] |
| thlP8F83_14310 | WRY49885.1 | OG0000234 | CP121166.1:2795027–2796208 - | acetyl-CoA C-acetyltransferase [Clostridium intestinale] |
| crtP8F83_22455 | WRY51379.1 | OG0000330 | CP121166.1:4458374–4459276 + | bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [Clostridium intestinale] |
| fabZP8F83_04390 | WRY52436.1 | OG0000785 | CP121166.1:867513–867935 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium intestinale] |
| adhEP8F83_00975 | WRY51774.1 | OG0001124 | CP121166.1:216114–218705 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium intestinale] |
| adhEP8F83_20395 | WRY50980.1 | OG0001124 | CP121166.1:3999422–4002055 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium intestinale] |
| lctPP8F83_04885 | WRY52532.1 | OG0001228 | CP121166.1:950671–952212 + | L-lactate permease [Clostridium intestinale] |
| lctPP8F83_14085 | WRY49848.1 | OG0001228 | CP121166.1:2757782–2759305 - | L-lactate permease [Clostridium intestinale] |
| crtP8F83_15175 | WRY50033.1 | OG0001394 | CP121166.1:2950467–2951249 - | short-chain-enoyl-CoA hydratase [Clostridium intestinale] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.