Assembly
ASM3598680v1
BioProject PRJNA1056781 · BioSample SAMN39108254
GENOME-RESOLVED EVIDENCE
GCA_035986805.1
Caproicibacter sp. BJN0012 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3580401 bp · GC 53.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_128742101.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 370.700 / 0.96300 | Bridge orthogroup OG0001120 |
| accBWP_128742097.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 144.100 / 0.97500 | Annotation: gene_symbol |
| accCWP_128742099.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 641.000 / 0.98900 | Annotation: gene_symbol |
| accDWP_128742100.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 378.500 / 0.90100 | Bridge orthogroup OG0000844 |
| bcdWP_128742066.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 577.900 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| bcdWP_128742801.1 · acyl-CoA dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 570.700 / 0.99700 | Bridge orthogroup OG0013412 |
| crtWP_128741710.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 344.200 / 0.99200 | Bridge orthogroup OG0002531 |
| crtWP_128742173.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 343.500 / 0.96500 | Bridge orthogroup OG0002531 |
| crtWP_128741828.1 · enoyl-CoA hydratase/isomerase family protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 305.300 / 1.00000 | Bridge orthogroup OG0002531 |
| etfAWP_128742065.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 411.200 / 0.98200 | Bridge orthogroup OG0001385 |
| etfAWP_128743106.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 356.800 / 0.97300 | Bridge orthogroup OG0002903 |
| etfBWP_128741389.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 343.800 / 1.00000 | Annotation: gene_symbol |
| etfBWP_128742064.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 343.600 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_326974612.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 300.200 / 1.00000 | Bridge orthogroup OG0002348 |
| fabFWP_128742096.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 550.200 / 0.98800 | Annotation: gene_symbol |
| fabGWP_128742094.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 253.100 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_326974560.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 78.600 / 0.72700 | Bridge orthogroup OG0000074 |
| hbdWP_128741968.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 285.600 / 0.97900 | Bridge orthogroup OG0000153 |
| hbdWP_326975475.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 229.400 / 0.99600 | Bridge orthogroup OG0000153 |
| lctPWP_128742006.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 606.200 / 0.99200 | Bridge orthogroup OG0000731 |
| lctPWP_128742007.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 366.400 / 0.97400 | Bridge orthogroup OG0000731 |
| rnfAWP_128743348.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 238.800 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_128743346.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 273.200 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_128743354.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 323.900 / 0.74100 | Bridge orthogroup OG0001114 |
| rnfDWP_128743353.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 375.700 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_128743350.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 241.400 / 0.89900 | Bridge orthogroup OG0001153 |
| rnfGWP_128743352.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 163.300 / 0.92800 | Bridge orthogroup OG0001292 |
| thlWP_326975094.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 310.100 / 0.97700 | Bridge orthogroup OG0000010 |
| etfAWP_128742796.1 · acryloyl-CoA reductase electron transfer subunit beta | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 260.600 / 0.63400 | Profile only |
| accBWP_128742149.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 82.800 / 0.52500 | Bridge orthogroup OG0000034 |
| bcdWP_128742175.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 609.800 / 0.99500 | Profile only |
| bcdWP_128743765.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 596.400 / 0.99500 | Profile only |
| bcdWP_128742550.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 567.400 / 0.99700 | Profile only |
| bcdWP_128741845.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 527.800 / 1.00000 | Profile only |
| bcdWP_128741391.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 502.700 / 0.98900 | Profile only |
| bcdWP_128741708.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 497.300 / 0.99700 | Profile only |
| bcdWP_128743722.1 · acryloyl-CoA reductase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 496.200 / 0.99700 | Profile only |
| bcdWP_128741388.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 484.700 / 0.98900 | Profile only |
| bcdWP_128742687.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 463.600 / 0.98900 | Profile only |
| bcdWP_128741681.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 447.500 / 0.99500 | Profile only |
| bcdWP_326975463.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 440.900 / 0.99200 | Profile only |
| bcdWP_326975186.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 425.900 / 0.98400 | Profile only |
| bcdWP_243112588.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 394.500 / 0.98900 | Profile only |
| bcdWP_326975500.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 361.700 / 0.98400 | Profile only |
| crtWP_128741842.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 362.500 / 0.98500 | Annotation: specific_product_name |
| crtWP_442872781.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 241.900 / 0.99600 | Annotation: specific_product_name |
| crtWP_326975027.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.200 / 0.97700 | Annotation: specific_product_name |
| etfAWP_128741390.1 · electron transfer flavoprotein subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 431.400 / 0.97900 | Profile only |
| etfAWP_128742177.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 413.400 / 0.98800 | Profile only |
| etfBWP_128742176.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 337.400 / 0.99200 | Profile only |
| etfBWP_326974563.1 · acryloyl-CoA reductase electron transfer subunit gamma | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 289.400 / 1.00000 | Profile only |
| fabGWP_326975477.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 255.100 / 1.00000 | Profile only |
| fabGWP_128744050.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 240.300 / 0.96800 | Profile only |
| fabGWP_326975096.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.600 / 0.99200 | Bridge orthogroup OG0000008 |
| fabGWP_128742799.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 216.500 / 0.98000 | Profile only |
| fabGWP_128743630.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.800 / 0.98400 | Profile only |
| fabGWP_326975472.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.400 / 0.97600 | Profile only |
| fabGWP_128743742.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.500 / 0.98000 | Profile only |
| fabGWP_326975095.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.98800 | Bridge orthogroup OG0000008 |
| fabGWP_128742766.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.000 / 0.98000 | Profile only |
| fabGWP_205703198.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.400 / 0.97200 | Profile only |
| fabGWP_128743523.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.100 / 0.98000 | Profile only |
| fabGWP_128742080.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.300 / 0.98800 | Profile only |
| fabGWP_326975213.1 · GolD/DthD family dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.600 / 0.98400 | Profile only |
| fabGWP_326975474.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.300 / 0.98400 | Bridge orthogroup OG0000008 |
| fabGWP_128742202.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.100 / 0.98400 | Profile only |
| fabGWP_128744233.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 134.700 / 0.97600 | Profile only |
| fabGWP_326974523.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 131.700 / 0.98000 | Profile only |
| fabGWP_128743723.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 108.200 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_128742090.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 257.200 / 0.98500 | Profile only |
| fabKWP_128742092.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 466.300 / 0.99400 | Profile only |
| fabKWP_326975024.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 329.400 / 0.98100 | Profile only |
| fabKWP_326975468.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 296.200 / 0.98100 | Profile only |
| fabKWP_128742095.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 185.600 / 0.94900 | Profile only |
| fabLWP_128742799.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.000 / 0.98800 | Profile only |
| fabLWP_128742094.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.400 / 0.97200 | Profile only |
| fabLWP_326975472.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.700 / 0.97600 | Profile only |
| fabLWP_128744050.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.700 / 0.96000 | Profile only |
| fabLWP_326975477.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.400 / 0.97200 | Profile only |
| fabLWP_326975096.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.900 / 0.97200 | Profile only |
| fabLWP_128742080.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.800 / 0.97200 | Profile only |
| fabLWP_128743523.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.300 / 0.97200 | Profile only |
| fabLWP_128742766.1 · 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.200 / 0.97200 | Profile only |
| fabLWP_128742202.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.600 / 0.96800 | Profile only |
| fabLWP_205703198.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.500 / 0.97600 | Profile only |
| fabLWP_128743742.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.900 / 0.96400 | Profile only |
| fabLWP_128743630.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.000 / 0.97200 | Profile only |
| fabLWP_326975213.1 · GolD/DthD family dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.600 / 0.98000 | Profile only |
| fabLWP_326975474.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.600 / 0.98400 | Profile only |
| fabLWP_326975095.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.700 / 0.98800 | Profile only |
| fabLWP_128744233.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 123.000 / 0.98400 | Profile only |
| fabLWP_326974523.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.500 / 0.99200 | Profile only |
| fabZWP_128742098.1 · 3-hydroxyacyl-ACP dehydratase FabZ family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 90.400 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_128742174.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 402.000 / 0.98200 | Profile only |
| hbdWP_128742793.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 360.900 / 0.99600 | Profile only |
| ldhWP_128744042.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 364.600 / 0.96800 | Profile only |
| thlWP_128743398.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 589.600 / 0.99500 | Profile only |
| thlWP_128742172.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 582.300 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.