Assembly
ASM3628721v1
BioProject PRJNA1066600 · BioSample SAMN39497976
GENOME-RESOLVED EVIDENCE
GCA_036287215.1
Caproiciproducens sp. CPB-2 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3446181 bp · GC 52.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_275714943.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 386.500 / 0.95200 | Bridge orthogroup OG0001120 |
| accBWP_275714951.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 134.100 / 0.98800 | Annotation: gene_symbol |
| accCWP_275714947.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 663.000 / 0.99100 | Annotation: gene_symbol |
| accDWP_442867989.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 386.400 / 0.93500 | Bridge orthogroup OG0000844 |
| bcdWP_275716397.1 · acyl-CoA dehydrogenase | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 583.500 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| crtWP_275715704.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 331.600 / 0.96500 | Bridge orthogroup OG0002531 |
| etfAWP_275716399.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 423.800 / 0.98200 | Bridge orthogroup OG0001385 |
| etfBWP_275716401.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 339.500 / 1.00000 | Bridge orthogroup OG0001139 |
| fabFWP_275714953.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 582.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_275714957.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 249.500 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_275714961.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 481.900 / 0.99700 | Annotation: gene_symbol |
| fabZWP_275714949.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 96.800 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_275716407.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 610.600 / 0.98200 | Bridge orthogroup OG0000731 |
| ldhWP_275714584.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 359.600 / 0.98100 | Bridge orthogroup OG0001800 |
| rnfAWP_275713672.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 253.400 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_275713673.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 265.200 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_275713668.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 330.700 / 0.73200 | Bridge orthogroup OG0001114 |
| rnfDWP_275713669.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 364.500 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_275713671.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 259.300 / 0.95200 | Bridge orthogroup OG0001153 |
| rnfGWP_275713670.1 · FMN-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 148.000 / 0.93300 | Bridge orthogroup OG0001292 |
| bcdWP_275715708.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 633.600 / 0.99200 | Profile only |
| bcdWP_275713153.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 580.600 / 0.99700 | Profile only |
| etfAWP_275715712.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 441.000 / 0.98800 | Profile only |
| etfBWP_275715710.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 358.400 / 0.99600 | Profile only |
| fabGWP_275717883.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 240.300 / 0.97200 | Profile only |
| fabGWP_275716181.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 215.400 / 0.98800 | Profile only |
| fabGWP_275717953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.400 / 0.98400 | Profile only |
| fabGWP_275718003.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.600 / 0.98000 | Profile only |
| fabGWP_275714144.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.000 / 0.98800 | Profile only |
| fabGWP_275714578.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 112.800 / 0.76200 | Bridge orthogroup OG0000242 |
| fabHWP_275714963.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 237.600 / 0.98800 | Profile only |
| fabLWP_275717883.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 208.800 / 0.96000 | Profile only |
| fabLWP_275718003.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.900 / 0.97600 | Profile only |
| fabLWP_275716181.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.400 / 0.97200 | Profile only |
| fabLWP_275717953.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.700 / 0.97200 | Profile only |
| fabLWP_275714144.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.000 / 0.97600 | Profile only |
| hbdWP_275715706.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 411.100 / 0.98900 | Profile only |
| rnfCWP_275715439.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 444.700 / 0.99100 | Profile only |
| thlWP_275715702.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 614.100 / 0.99200 | Profile only |
| fabLWP_275714957.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 208.800 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.