Assembly
ASM3634769v1
BioProject PRJNA1068207 · BioSample SAMN39583504
GENOME-RESOLVED EVIDENCE
GCA_036347695.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3569162 bp · GC 28.500%
Completeness 96.660% · contamination 3.090%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCV1657_06775 | WVM61951.1 | OG0000061 | CP143492.1:1535125–1536477 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhV1657_00770 | WVM60800.1 | OG0000131 | CP143492.1:167526–168479 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBV1657_06765 | WVM61949.1 | OG0000212 | CP143492.1:1534200–1534691 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdV1657_13365 | WVM60322.1 | OG0000229 | CP143492.1:2935544–2936392 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlV1657_12755 | WVM60228.1 | OG0000234 | CP143492.1:2818382–2819560 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZV1657_06770 | WVM61950.1 | OG0000785 | CP143492.1:1534694–1535113 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEV1657_14665 | WVM60551.1 | OG0001124 | CP143492.1:3193267–3195864 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPV1657_01805 | WVM60991.1 | OG0001228 | CP143492.1:406270–407793 + | L-lactate permease [Clostridium perfringens] |
| crtV1657_13385 | WVM60326.1 | OG0001394 | CP143492.1:2939519–2940301 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtV1657_00730 | WVM60792.1 | OG0001639 | CP143492.1:156873–157649 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.