Assembly
ASM3634777v1
BioProject PRJNA1068207 · BioSample SAMN39583616
GENOME-RESOLVED EVIDENCE
GCA_036347775.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3638430 bp · GC 28.500%
Completeness 96.330% · contamination 9.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCV1680_07285 | WVM77362.1 | OG0000061 | CP143534.1:1659167–1660519 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhV1680_00735 | WVM76111.1 | OG0000131 | CP143534.1:164346–165299 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBV1680_07275 | WVM77360.1 | OG0000212 | CP143534.1:1658242–1658733 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdV1680_13490 | WVM75647.1 | OG0000229 | CP143534.1:3035341–3036189 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlV1680_12890 | WVM75555.1 | OG0000234 | CP143534.1:2920423–2921601 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZV1680_07280 | WVM77361.1 | OG0000785 | CP143534.1:1658736–1659155 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEV1680_14795 | WVM75876.1 | OG0001124 | CP143534.1:3292708–3295305 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtV1680_13510 | WVM75651.1 | OG0001394 | CP143534.1:3039315–3040097 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtV1680_00680 | WVM76100.1 | OG0001639 | CP143534.1:150601–151377 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.