Assembly
BR_422
BioProject PRJNA940296 · BioSample SAMN33560686
GENOME-RESOLVED EVIDENCE
GCA_036699995.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5552291 bp · GC 30.000%
Completeness 88.980% · contamination 6.020%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPZA12_05750 | WWA22642.1 | OG0000061 | CP144906.1:1241494–1242846 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| accCPZA12_14125 | WWA19547.1 | OG0000061 | CP144906.1:3052715–3054058 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhPZA12_05420 | WWA22576.1 | OG0000131 | CP144906.1:1166759–1167709 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhPZA12_14350 | WWA19591.1 | OG0000131 | CP144906.1:3106458–3107411 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhPZA12_19890 | WWA20634.1 | OG0000131 | CP144906.1:4302695–4303645 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhPZA12_23835 | WWA21396.1 | OG0000131 | CP144906.1:5313043–5313990 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBPZA12_05740 | WWA22640.1 | OG0000212 | CP144906.1:1240532–1241047 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdPZA12_01575 | WWA21861.1 | OG0000229 | CP144906.1:332094–332942 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlPZA12_02445 | WWA22011.1 | OG0000234 | CP144906.1:488464–489645 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| thlPZA12_18455 | WWA20362.1 | OG0000234 | CP144906.1:3985131–3986309 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| fabZPZA12_05745 | WWA22641.1 | OG0000785 | CP144906.1:1241051–1241479 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium beijerinckii] |
| adhEPZA12_01485 | WWA21844.1 | OG0001124 | CP144906.1:306040–308634 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPPZA12_14780 | WWA19671.1 | OG0001228 | CP144906.1:3203507–3205042 - | L-lactate permease [Clostridium beijerinckii] |
| crtPZA12_01555 | WWA21857.1 | OG0001394 | CP144906.1:328070–328855 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.