Assembly
ASM3705820v1
BioProject PRJNA961371 · BioSample SAMN34359740
GENOME-RESOLVED EVIDENCE
GCA_037058205.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3765162 bp · GC 28.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQJR26_08630 | WWU66430.1 | OG0000061 | CP124297.1:1669321–1670673 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhQJR26_05910 | WWU65897.1 | OG0000131 | CP124297.1:1135820–1136770 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhQJR26_16535 | WWU64606.1 | OG0000131 | CP124297.1:3290074–3291024 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBQJR26_08620 | WWU66428.1 | OG0000212 | CP124297.1:1668381–1668887 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdQJR26_01905 | WWU65155.1 | OG0000229 | CP124297.1:396148–396996 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlQJR26_02990 | WWU65340.1 | OG0000234 | CP124297.1:579912–581090 + | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZQJR26_08625 | WWU66429.1 | OG0000785 | CP124297.1:1668889–1669311 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPQJR26_04245 | WWU65577.1 | OG0001228 | CP124297.1:807717–809243 + | lactate permease LctP family transporter [Clostridium baratii] |
| crtQJR26_01885 | WWU65151.1 | OG0001394 | CP124297.1:392295–393077 + | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.