Assembly
ASM3705903v1
BioProject PRJNA961371 · BioSample SAMN34359739
GENOME-RESOLVED EVIDENCE
GCA_037059035.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3651452 bp · GC 28.000%
Completeness 98.140% · contamination 1.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQJR50_08900 | WWU66978.1 | OG0000061 | CP124306.1:1790502–1791854 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhQJR50_01125 | WWU68797.1 | OG0000131 | CP124306.1:229552–230502 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhQJR50_12035 | WWU67590.1 | OG0000131 | CP124306.1:2383920–2384870 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBQJR50_08910 | WWU66980.1 | OG0000212 | CP124306.1:1792288–1792794 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdQJR50_15735 | WWU68268.1 | OG0000229 | CP124306.1:3045425–3046273 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlQJR50_15085 | WWU68169.1 | OG0000234 | CP124306.1:2925093–2926271 - | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZQJR50_08905 | WWU66979.1 | OG0000785 | CP124306.1:1791864–1792286 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPQJR50_14000 | WWU67970.1 | OG0001228 | CP124306.1:2737263–2738789 - | L-lactate permease [Clostridium baratii] |
| crtQJR50_15755 | WWU68272.1 | OG0001394 | CP124306.1:3049343–3050125 - | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.