Assembly
ASM3706602v1
BioProject PRJNA961371 · BioSample SAMN34359736
GENOME-RESOLVED EVIDENCE
GCA_037066025.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3078956 bp · GC 28.500%
Completeness 98.760% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQJR45_07810 | WWU76472.1 | OG0000061 | CP124317.1:1637293–1638645 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhQJR45_01000 | WWU77953.1 | OG0000131 | CP124317.1:211346–212296 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhQJR45_10185 | WWU76936.1 | OG0000131 | CP124317.1:2122582–2123532 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBQJR45_07820 | WWU76474.1 | OG0000212 | CP124317.1:1639079–1639585 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdQJR45_13025 | WWU77450.1 | OG0000229 | CP124317.1:2683165–2684013 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlQJR45_12280 | WWU77329.1 | OG0000234 | CP124317.1:2546938–2548116 - | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZQJR45_07815 | WWU76473.1 | OG0000785 | CP124317.1:1638655–1639077 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPQJR45_11510 | WWU77189.1 | OG0001228 | CP124317.1:2393320–2394846 - | lactate permease LctP family transporter [Clostridium baratii] |
| crtQJR45_13045 | WWU77454.1 | OG0001394 | CP124317.1:2687083–2687865 - | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.