Assembly
ASM3706970v1
BioProject PRJNA961371 · BioSample SAMN34359734
GENOME-RESOLVED EVIDENCE
GCA_037069705.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3056535 bp · GC 28.500%
Completeness 98.450% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQIT93_07605 | WWU82193.1 | OG0000061 | CP124319.1:1607875–1609227 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhQIT93_00980 | WWU83679.1 | OG0000131 | CP124319.1:203474–204424 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhQIT93_10115 | WWU82683.1 | OG0000131 | CP124319.1:2113904–2114854 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBQIT93_07615 | WWU82195.1 | OG0000212 | CP124319.1:1609661–1610167 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdQIT93_12870 | WWU83179.1 | OG0000229 | CP124319.1:2660614–2661462 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlQIT93_12210 | WWU83076.1 | OG0000234 | CP124319.1:2538915–2540093 - | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZQIT93_07610 | WWU82194.1 | OG0000785 | CP124319.1:1609237–1609659 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPQIT93_11440 | WWU82937.1 | OG0001228 | CP124319.1:2387290–2388816 - | lactate permease LctP family transporter [Clostridium baratii] |
| crtQIT93_12890 | WWU83183.1 | OG0001394 | CP124319.1:2664532–2665314 - | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.