Assembly
ASM3708180v1
BioProject PRJNA1010682 · BioSample SAMN37194955
GENOME-RESOLVED EVIDENCE
GCA_037081805.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3636092 bp · GC 28.000%
Completeness 97.180% · contamination 6.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCRJU50_07435 | WWW10245.1 | OG0000061 | CP134262.1:1632449–1633801 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhRJU50_00670 | WWW08957.1 | OG0000131 | CP134262.1:151109–152062 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBRJU50_07425 | WWW10243.1 | OG0000212 | CP134262.1:1631524–1632015 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdRJU50_13535 | WWW08482.1 | OG0000229 | CP134262.1:2951480–2952328 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlRJU50_12860 | WWW08374.1 | OG0000234 | CP134262.1:2822374–2823552 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZRJU50_07430 | WWW10244.1 | OG0000785 | CP134262.1:1632018–1632437 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhERJU50_14825 | WWW08713.1 | OG0001124 | CP134262.1:3209104–3211701 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPRJU50_01785 | WWW09159.1 | OG0001228 | CP134262.1:402855–404378 + | L-lactate permease [Clostridium perfringens] |
| crtRJU50_13555 | WWW08486.1 | OG0001394 | CP134262.1:2955455–2956237 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtRJU50_00630 | WWW08949.1 | OG0001639 | CP134262.1:140455–141231 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.