Assembly
ASM3710139v1
BioProject PRJDB17115 · BioSample SAMD00659840
GENOME-RESOLVED EVIDENCE
GCA_037101395.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2853896 bp · GC 28.500%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCK154301001_25780 | BEV20723.1 | OG0000061 | AP029031.1:2745484–2746824 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldhK154301001_19020 | BEV20047.1 | OG0000131 | AP029031.1:2022550–2023500 - | L-lactate dehydrogenase [Clostridium tetani] |
| accBK154301001_25800 | BEV20725.1 | OG0000212 | AP029031.1:2747295–2747753 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tetani] |
| hbdK154301001_22640 | BEV20409.1 | OG0000229 | AP029031.1:2417572–2418420 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlK154301001_01450 | BEV18290.1 | OG0000234 | AP029031.1:176048–177223 + | acetyl-CoA C-acetyltransferase [Clostridium tetani] |
| fabZK154301001_25790 | BEV20724.1 | OG0000785 | AP029031.1:2746832–2747260 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tetani] |
| adhEK154301001_12330 | BEV19378.1 | OG0001124 | AP029031.1:1335426–1338056 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tetani] |
| lctPK154301001_08040 | BEV18949.1 | OG0001228 | AP029031.1:917028–918548 + | L-lactate permease [Clostridium tetani] |
| rnfAK154301001_08560 | BEV19001.1 | OG0001328 | AP029031.1:971102–971677 + | electron transport complex protein RnfA [Clostridium tetani] |
| crtK154301001_22680 | BEV20413.1 | OG0001394 | AP029031.1:2421431–2422213 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtK154301001_03070 | BEV18452.1 | OG0001639 | AP029031.1:356304–357080 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| fabHK154301001_06730 | BEV18818.1 | OG0003311 | AP029031.1:783635–784645 - | 3-oxoacyl-ACP synthase III family protein [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.