Assembly
ASM3749128v1
BioProject PRJNA1087353 · BioSample SAMN40441256
GENOME-RESOLVED EVIDENCE
GCA_037491285.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3471593 bp · GC 28.500%
Completeness 95.850% · contamination 4.110%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY25_06225 | WXL55200.1 | OG0000061 | CP148588.1:1343824–1345176 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY25_12230 | WXL53499.1 | OG0000131 | CP148588.1:2695563–2696516 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY25_06235 | WXL55202.1 | OG0000212 | CP148588.1:1345610–1346101 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY25_14895 | WXL53956.1 | OG0000229 | CP148588.1:3236990–3237838 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY25_00250 | WXL54050.1 | OG0000234 | CP148588.1:52944–54122 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY25_06230 | WXL55201.1 | OG0000785 | CP148588.1:1345188–1345607 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY25_13595 | WXL53726.1 | OG0001124 | CP148588.1:2977666–2980263 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY25_11190 | WXL53307.1 | OG0001228 | CP148588.1:2450167–2451690 - | L-lactate permease [Clostridium perfringens] |
| crtWHY25_14875 | WXL53952.1 | OG0001394 | CP148588.1:3233081–3233863 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY25_12270 | WXL53507.1 | OG0001639 | CP148588.1:2706386–2707162 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.