Assembly
ASM3749223v1
BioProject PRJNA1087353 · BioSample SAMN40441255
GENOME-RESOLVED EVIDENCE
GCA_037492235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3477438 bp · GC 28.500%
Completeness 97.300% · contamination 4.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY26_00115 | WXL57156.1 | OG0000061 | CP148593.1:18608–19960 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY26_06265 | WXL58315.1 | OG0000131 | CP148593.1:1389539–1390492 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY26_00125 | WXL57158.1 | OG0000212 | CP148593.1:20394–20885 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY26_09095 | WXL56011.1 | OG0000229 | CP148593.1:1963713–1964561 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY26_09770 | WXL56118.1 | OG0000234 | CP148593.1:2091735–2092913 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY26_00120 | WXL57157.1 | OG0000785 | CP148593.1:19972–20391 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY26_07705 | WXL55766.1 | OG0001124 | CP148593.1:1685510–1688107 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY26_05175 | WXL58118.1 | OG0001228 | CP148593.1:1138517–1140040 - | L-lactate permease [Clostridium perfringens] |
| crtWHY26_09075 | WXL56007.1 | OG0001394 | CP148593.1:1959804–1960586 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY26_06305 | WXL58323.1 | OG0001639 | CP148593.1:1400362–1401138 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.