Assembly
ASM3749468v1
BioProject PRJNA1087353 · BioSample SAMN40441252
GENOME-RESOLVED EVIDENCE
GCA_037494685.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3529143 bp · GC 28.500%
Completeness 98.040% · contamination 5.650%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY32_06565 | WXL67714.1 | OG0000061 | CP148606.1:1479793–1481145 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY32_00315 | WXL66520.1 | OG0000131 | CP148606.1:79121–80074 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY32_06555 | WXL67712.1 | OG0000212 | CP148606.1:1478868–1479359 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY32_13045 | WXL66030.1 | OG0000229 | CP148606.1:2864350–2865198 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY32_12370 | WXL65923.1 | OG0000234 | CP148606.1:2736155–2737333 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY32_06560 | WXL67713.1 | OG0000785 | CP148606.1:1479362–1479781 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY32_14350 | WXL66260.1 | OG0001124 | CP148606.1:3121599–3124196 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY32_01525 | WXL66743.1 | OG0001228 | CP148606.1:352742–354265 + | L-lactate permease [Clostridium perfringens] |
| crtWHY32_13065 | WXL66034.1 | OG0001394 | CP148606.1:2868325–2869107 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY32_00275 | WXL66512.1 | OG0001639 | CP148606.1:68471–69247 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.