Assembly
ASM3749535v1
BioProject PRJNA1087353 · BioSample SAMN40441251
GENOME-RESOLVED EVIDENCE
GCA_037495355.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3423942 bp · GC 28.500%
Completeness 97.080% · contamination 4.700%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY42_05870 | WXL70628.1 | OG0000061 | CP148610.1:1282467–1283819 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY42_11930 | WXL68971.1 | OG0000131 | CP148610.1:2653342–2654295 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY42_05880 | WXL70630.1 | OG0000212 | CP148610.1:1284253–1284744 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY42_14770 | WXL69462.1 | OG0000229 | CP148610.1:3228387–3229235 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY42_00250 | WXL69554.1 | OG0000234 | CP148610.1:52962–54140 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY42_05875 | WXL70629.1 | OG0000785 | CP148610.1:1283831–1284250 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY42_13385 | WXL69218.1 | OG0001124 | CP148610.1:2949370–2951967 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY42_10860 | WXL68777.1 | OG0001228 | CP148610.1:2403575–2405098 - | L-lactate permease [Clostridium perfringens] |
| crtWHY42_14750 | WXL69458.1 | OG0001394 | CP148610.1:3224478–3225260 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY42_11970 | WXL68979.1 | OG0001639 | CP148610.1:2664165–2664941 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.