Assembly
ASM3749614v1
BioProject PRJNA1087353 · BioSample SAMN40441250
GENOME-RESOLVED EVIDENCE
GCA_037496145.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3445511 bp · GC 28.500%
Completeness 98.670% · contamination 5.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY33_06100 | WXL73724.1 | OG0000061 | CP148613.1:1423226–1424578 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY33_00315 | WXL72623.1 | OG0000131 | CP148613.1:79144–80097 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY33_06090 | WXL73722.1 | OG0000212 | CP148613.1:1422301–1422792 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY33_12580 | WXL72165.1 | OG0000229 | CP148613.1:2803954–2804802 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY33_11975 | WXL72071.1 | OG0000234 | CP148613.1:2686558–2687736 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY33_06095 | WXL73723.1 | OG0000785 | CP148613.1:1422795–1423214 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY33_13880 | WXL72396.1 | OG0001124 | CP148613.1:3061210–3063807 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY33_01400 | WXL72824.1 | OG0001228 | CP148613.1:331977–333500 + | L-lactate permease [Clostridium perfringens] |
| rnfAWHY33_06050 | WXL73714.1 | OG0001328 | CP148613.1:1415659–1416234 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWHY33_12600 | WXL72169.1 | OG0001394 | CP148613.1:2807929–2808711 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY33_00275 | WXL72615.1 | OG0001639 | CP148613.1:68494–69270 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.