Assembly
ASM3749713v1
BioProject PRJNA1087353 · BioSample SAMN40441249
GENOME-RESOLVED EVIDENCE
GCA_037497135.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3469484 bp · GC 28.500%
Completeness 96.940% · contamination 4.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY64_09190 | WXL74453.1 | OG0000061 | CP148618.1:1996488–1997840 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY64_03280 | WXL76200.1 | OG0000131 | CP148618.1:647734–648687 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY64_09180 | WXL74451.1 | OG0000212 | CP148618.1:1995563–1996054 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY64_00435 | WXL75710.1 | OG0000229 | CP148618.1:75225–76073 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY64_15180 | WXL75605.1 | OG0000234 | CP148618.1:3289024–3290202 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY64_09185 | WXL74452.1 | OG0000785 | CP148618.1:1996057–1996476 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY64_01835 | WXL75958.1 | OG0001124 | CP148618.1:350698–353295 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY64_04320 | WXL76392.1 | OG0001228 | CP148618.1:892565–894088 + | L-lactate permease [Clostridium perfringens] |
| crtWHY64_00455 | WXL75714.1 | OG0001394 | CP148618.1:79200–79982 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY64_03240 | WXL76192.1 | OG0001639 | CP148618.1:637088–637864 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.