Assembly
ASM3749794v1
BioProject PRJNA1087353 · BioSample SAMN40441248
GENOME-RESOLVED EVIDENCE
GCA_037497945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3446766 bp · GC 28.500%
Completeness 96.480% · contamination 4.640%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY37_06000 | WXL79754.1 | OG0000061 | CP148621.1:1308855–1310207 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY37_12265 | WXL78072.1 | OG0000131 | CP148621.1:2701176–2702129 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY37_06010 | WXL79756.1 | OG0000212 | CP148621.1:1310641–1311132 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY37_14935 | WXL78531.1 | OG0000229 | CP148621.1:3244576–3245424 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY37_00250 | WXL78646.1 | OG0000234 | CP148621.1:52957–54135 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY37_06005 | WXL79755.1 | OG0000785 | CP148621.1:1310219–1310638 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY37_13635 | WXL78302.1 | OG0001124 | CP148621.1:2985849–2988446 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY37_11195 | WXL77874.1 | OG0001228 | CP148621.1:2451761–2453284 - | L-lactate permease [Clostridium perfringens] |
| crtWHY37_14915 | WXL78527.1 | OG0001394 | CP148621.1:3240667–3241449 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY37_12305 | WXL78080.1 | OG0001639 | CP148621.1:2711998–2712774 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.