Assembly
ASM3749883v1
BioProject PRJNA1087353 · BioSample SAMN40441247
GENOME-RESOLVED EVIDENCE
GCA_037498835.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3530252 bp · GC 28.500%
Completeness 97.760% · contamination 5.500%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY23_09760 | WXL80640.1 | OG0000061 | CP148624.1:2088284–2089636 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY23_03305 | WXL82279.1 | OG0000131 | CP148624.1:648736–649689 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY23_09750 | WXL80638.1 | OG0000212 | CP148624.1:2087359–2087850 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY23_00440 | WXL81783.1 | OG0000229 | CP148624.1:74618–75466 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY23_15190 | WXL81678.1 | OG0000234 | CP148624.1:3285517–3286695 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY23_09755 | WXL80639.1 | OG0000785 | CP148624.1:2087853–2088272 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY23_01840 | WXL82030.1 | OG0001124 | CP148624.1:349485–352082 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY23_04495 | WXL82498.1 | OG0001228 | CP148624.1:918828–920351 + | L-lactate permease [Clostridium perfringens] |
| crtWHY23_00460 | WXL81787.1 | OG0001394 | CP148624.1:78593–79375 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY23_03265 | WXL82271.1 | OG0001639 | CP148624.1:638090–638866 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.