Assembly
ASM3749972v1
BioProject PRJNA1087353 · BioSample SAMN40441246
GENOME-RESOLVED EVIDENCE
GCA_037499725.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3446484 bp · GC 28.500%
Completeness 96.620% · contamination 5.070%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY16_05955 | WXL85855.1 | OG0000061 | CP148629.1:1308528–1309880 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY16_11725 | WXL84184.1 | OG0000131 | CP148629.1:2645330–2646283 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY16_05965 | WXL85857.1 | OG0000212 | CP148629.1:1310314–1310805 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY16_14435 | WXL84652.1 | OG0000229 | CP148629.1:3195606–3196454 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY16_00250 | WXL84762.1 | OG0000234 | CP148629.1:52959–54137 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY16_05960 | WXL85856.1 | OG0000785 | CP148629.1:1309892–1310311 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY16_13145 | WXL84424.1 | OG0001124 | CP148629.1:2936777–2939374 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY16_10655 | WXL83986.1 | OG0001228 | CP148629.1:2395508–2397031 - | L-lactate permease [Clostridium perfringens] |
| crtWHY16_14415 | WXL84648.1 | OG0001394 | CP148629.1:3191697–3192479 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY16_11765 | WXL84191.1 | OG0001639 | CP148629.1:2656153–2656929 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.