Assembly
ASM3750061v1
BioProject PRJNA1087353 · BioSample SAMN40441245
GENOME-RESOLVED EVIDENCE
GCA_037500615.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3409633 bp · GC 28.500%
Completeness 97.550% · contamination 4.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY38_05880 | WXL88849.1 | OG0000061 | CP148633.1:1282370–1283722 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY38_11635 | WXL87190.1 | OG0000131 | CP148633.1:2604271–2605224 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY38_05890 | WXL88851.1 | OG0000212 | CP148633.1:1284156–1284647 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY38_14455 | WXL87675.1 | OG0000229 | CP148633.1:3177961–3178809 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY38_00250 | WXL87770.1 | OG0000234 | CP148633.1:52924–54102 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY38_05885 | WXL88850.1 | OG0000785 | CP148633.1:1283734–1284153 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY38_13070 | WXL87430.1 | OG0001124 | CP148633.1:2899440–2902037 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY38_10475 | WXL86978.1 | OG0001228 | CP148633.1:2336876–2338399 - | L-lactate permease [Clostridium perfringens] |
| crtWHY38_14435 | WXL87671.1 | OG0001394 | CP148633.1:3174052–3174834 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY38_11675 | WXL87198.1 | OG0001639 | CP148633.1:2615100–2615876 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.