Assembly
ASM3750168v1
BioProject PRJNA1087353 · BioSample SAMN40441244
GENOME-RESOLVED EVIDENCE
GCA_037501685.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3385768 bp · GC 28.500%
Completeness 98.660% · contamination 4.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY34_06100 | WXL91963.1 | OG0000061 | CP148638.1:1422563–1423915 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY34_00315 | WXL90867.1 | OG0000131 | CP148638.1:79142–80095 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY34_06090 | WXL91961.1 | OG0000212 | CP148638.1:1421638–1422129 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY34_12805 | WXL90412.1 | OG0000229 | CP148638.1:2841108–2841956 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY34_12200 | WXL90320.1 | OG0000234 | CP148638.1:2723713–2724891 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY34_06095 | WXL91962.1 | OG0000785 | CP148638.1:1422132–1422551 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY34_14105 | WXL90642.1 | OG0001124 | CP148638.1:3098364–3100961 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY34_01395 | WXL91067.1 | OG0001228 | CP148638.1:331983–333506 + | L-lactate permease [Clostridium perfringens] |
| rnfAWHY34_06050 | WXL91953.1 | OG0001328 | CP148638.1:1414996–1415571 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWHY34_12825 | WXL90416.1 | OG0001394 | CP148638.1:2845083–2845865 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY34_00275 | WXL92174.1 | OG0001639 | CP148638.1:68492–69268 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.