Assembly
ASM3750255v1
BioProject PRJNA1087353 · BioSample SAMN40441243
GENOME-RESOLVED EVIDENCE
GCA_037502555.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3484714 bp · GC 28.500%
Completeness 97.930% · contamination 5.640%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY39_06065 | WXL94867.1 | OG0000061 | CP148641.1:1327715–1329067 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY39_12405 | WXL93189.1 | OG0000131 | CP148641.1:2731001–2731954 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY39_06075 | WXL94869.1 | OG0000212 | CP148641.1:1329501–1329992 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY39_15060 | WXL93644.1 | OG0000229 | CP148641.1:3271092–3271940 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY39_00250 | WXL93756.1 | OG0000234 | CP148641.1:52941–54119 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY39_06070 | WXL94868.1 | OG0000785 | CP148641.1:1329079–1329498 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY39_13760 | WXL93415.1 | OG0001124 | CP148641.1:3012007–3014604 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY39_11315 | WXL92990.1 | OG0001228 | CP148641.1:2482112–2483635 - | L-lactate permease [Clostridium perfringens] |
| crtWHY39_15040 | WXL93640.1 | OG0001394 | CP148641.1:3267183–3267965 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY39_12445 | WXL93197.1 | OG0001639 | CP148641.1:2741824–2742600 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.