Assembly
ASM3750370v1
BioProject PRJNA1087353 · BioSample SAMN40441242
GENOME-RESOLVED EVIDENCE
GCA_037503705.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3469682 bp · GC 28.500%
Completeness 96.940% · contamination 4.490%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY63_06245 | WXL98028.1 | OG0000061 | CP148644.1:1427848–1429200 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY63_00315 | WXL96906.1 | OG0000131 | CP148644.1:79096–80049 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY63_06235 | WXL98026.1 | OG0000212 | CP148644.1:1426923–1427414 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY63_12900 | WXL96432.1 | OG0000229 | CP148644.1:2844804–2845652 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY63_12240 | WXL96328.1 | OG0000234 | CP148644.1:2720399–2721577 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY63_06240 | WXL98027.1 | OG0000785 | CP148644.1:1427417–1427836 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY63_14300 | WXL96680.1 | OG0001124 | CP148644.1:3120277–3122874 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY63_01355 | WXL97098.1 | OG0001228 | CP148644.1:323927–325450 + | L-lactate permease [Clostridium perfringens] |
| crtWHY63_12920 | WXL96436.1 | OG0001394 | CP148644.1:2848779–2849561 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY63_00275 | WXL96898.1 | OG0001639 | CP148644.1:68450–69226 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.