Assembly
ASM3750445v1
BioProject PRJNA1087353 · BioSample SAMN40441241
GENOME-RESOLVED EVIDENCE
GCA_037504455.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3462879 bp · GC 28.500%
Completeness 96.940% · contamination 4.470%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY27_06240 | WXM01086.1 | OG0000061 | CP148648.1:1430299–1431651 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY27_00315 | WXL99957.1 | OG0000131 | CP148648.1:79097–80050 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY27_06230 | WXM01084.1 | OG0000212 | CP148648.1:1429374–1429865 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY27_12615 | WXL99468.1 | OG0000229 | CP148648.1:2809146–2809994 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY27_11950 | WXL99362.1 | OG0000234 | CP148648.1:2683517–2684695 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY27_06235 | WXM01085.1 | OG0000785 | CP148648.1:1429868–1430287 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY27_14005 | WXL99715.1 | OG0001124 | CP148648.1:3087831–3090428 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY27_01355 | WXM00150.1 | OG0001228 | CP148648.1:323928–325451 + | L-lactate permease [Clostridium perfringens] |
| crtWHY27_12635 | WXL99472.1 | OG0001394 | CP148648.1:2813121–2813903 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY27_00275 | WXL99949.1 | OG0001639 | CP148648.1:68451–69227 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.