Assembly
ASM3750651v1
BioProject PRJNA1087353 · BioSample SAMN40441239
GENOME-RESOLVED EVIDENCE
GCA_037506515.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3486185 bp · GC 28.500%
Completeness 96.300% · contamination 4.310%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY40_06240 | WXM07143.1 | OG0000061 | CP148657.1:1427850–1429202 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY40_00315 | WXM06021.1 | OG0000131 | CP148657.1:79097–80050 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY40_06230 | WXM07141.1 | OG0000212 | CP148657.1:1426925–1427416 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY40_12905 | WXM05546.1 | OG0000229 | CP148657.1:2847229–2848077 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY40_12235 | WXM05441.1 | OG0000234 | CP148657.1:2721612–2722790 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY40_06235 | WXM07142.1 | OG0000785 | CP148657.1:1427419–1427838 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY40_14305 | WXM05794.1 | OG0001124 | CP148657.1:3122702–3125299 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY40_01355 | WXM06214.1 | OG0001228 | CP148657.1:323928–325451 + | L-lactate permease [Clostridium perfringens] |
| crtWHY40_12925 | WXM05550.1 | OG0001394 | CP148657.1:2851204–2851986 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY40_00275 | WXM06013.1 | OG0001639 | CP148657.1:68451–69227 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.