Assembly
ASM3750752v1
BioProject PRJNA1087353 · BioSample SAMN40441238
GENOME-RESOLVED EVIDENCE
GCA_037507525.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3534147 bp · GC 28.500%
Completeness 96.560% · contamination 6.730%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY41_07100 | WXM10354.1 | OG0000061 | CP148661.1:1601520–1602872 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY41_00715 | WXM09136.1 | OG0000131 | CP148661.1:161019–161972 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY41_07090 | WXM10352.1 | OG0000212 | CP148661.1:1600595–1601086 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY41_13285 | WXM08655.1 | OG0000229 | CP148661.1:2953688–2954536 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY41_12675 | WXM08561.1 | OG0000234 | CP148661.1:2835815–2836993 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY41_07095 | WXM10353.1 | OG0000785 | CP148661.1:1601089–1601508 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY41_14590 | WXM08884.1 | OG0001124 | CP148661.1:3211354–3213951 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY41_01810 | WXM09337.1 | OG0001228 | CP148661.1:417830–419353 + | L-lactate permease [Clostridium perfringens] |
| crtWHY41_13305 | WXM08659.1 | OG0001394 | CP148661.1:2957663–2958445 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY41_00655 | WXM09124.1 | OG0001639 | CP148661.1:145590–146366 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.