Assembly
ASM3750855v1
BioProject PRJNA1087353 · BioSample SAMN40441237
GENOME-RESOLVED EVIDENCE
GCA_037508555.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3294289 bp · GC 28.500%
Completeness 96.150% · contamination 4.300%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY30_06635 | WXM13332.1 | OG0000061 | CP148668.1:1532895–1534247 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY30_00815 | WXM12211.1 | OG0000131 | CP148668.1:174628–175581 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY30_06625 | WXM13330.1 | OG0000212 | CP148668.1:1531970–1532461 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY30_12710 | WXM11696.1 | OG0000229 | CP148668.1:2861380–2862228 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY30_12100 | WXM11601.1 | OG0000234 | CP148668.1:2743564–2744742 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY30_06630 | WXM13331.1 | OG0000785 | CP148668.1:1532464–1532883 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY30_14085 | WXM11940.1 | OG0001124 | CP148668.1:3137487–3140084 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY30_01890 | WXM12410.1 | OG0001228 | CP148668.1:426842–428365 + | L-lactate permease [Clostridium perfringens] |
| crtWHY30_12730 | WXM11700.1 | OG0001394 | CP148668.1:2865355–2866137 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY30_00755 | WXM12199.1 | OG0001639 | CP148668.1:159199–159975 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.