Assembly
ASM3750944v1
BioProject PRJNA1087353 · BioSample SAMN40441236
GENOME-RESOLVED EVIDENCE
GCA_037509445.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3512370 bp · GC 28.500%
Completeness 97.300% · contamination 5.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY44_06970 | WXM16272.1 | OG0000061 | CP148670.1:1616758–1618110 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY44_00990 | WXM15131.1 | OG0000131 | CP148670.1:215874–216827 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY44_06960 | WXM16270.1 | OG0000212 | CP148670.1:1615833–1616324 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY44_13365 | WXM14598.1 | OG0000229 | CP148670.1:2999166–3000014 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY44_12750 | WXM14503.1 | OG0000234 | CP148670.1:2879836–2881014 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY44_06965 | WXM16271.1 | OG0000785 | CP148670.1:1616327–1616746 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY44_14755 | WXM14844.1 | OG0001124 | CP148670.1:3277338–3279935 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY44_02100 | WXM15336.1 | OG0001228 | CP148670.1:474295–475818 + | L-lactate permease [Clostridium perfringens] |
| crtWHY44_13385 | WXM14602.1 | OG0001394 | CP148670.1:3003141–3003923 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY44_00930 | WXM15119.1 | OG0001639 | CP148670.1:200445–201221 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.