Assembly
ASM3751213v1
BioProject PRJNA1087353 · BioSample SAMN40441233
GENOME-RESOLVED EVIDENCE
GCA_037512135.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3283205 bp · GC 28.500%
Completeness 97.300% · contamination 3.460%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY24_06405 | WXM24846.1 | OG0000061 | CP148679.1:1460310–1461662 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY24_00670 | WXM23759.1 | OG0000131 | CP148679.1:151483–152436 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY24_06395 | WXM24844.1 | OG0000212 | CP148679.1:1459385–1459876 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY24_12780 | WXM23305.1 | OG0000229 | CP148679.1:2838060–2838908 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY24_12175 | WXM23211.1 | OG0000234 | CP148679.1:2722564–2723742 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY24_06400 | WXM24845.1 | OG0000785 | CP148679.1:1459879–1460298 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY24_14080 | WXM23534.1 | OG0001124 | CP148679.1:3095636–3098233 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY24_01735 | WXM23956.1 | OG0001228 | CP148679.1:396342–397865 + | L-lactate permease [Clostridium perfringens] |
| crtWHY24_12800 | WXM23309.1 | OG0001394 | CP148679.1:2842035–2842817 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY24_00630 | WXM23751.1 | OG0001639 | CP148679.1:140837–141613 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.