Assembly
ASM3751407v1
BioProject PRJNA1087353 · BioSample SAMN40441231
GENOME-RESOLVED EVIDENCE
GCA_037514075.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3520236 bp · GC 28.500%
Completeness 96.010% · contamination 6.790%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY65_10175 | WXM28393.1 | OG0000061 | CP148684.1:2166188–2167540 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY65_00795 | WXM29600.1 | OG0000131 | CP148684.1:191785–192738 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY65_10185 | WXM28395.1 | OG0000212 | CP148684.1:2167974–2168465 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY65_03465 | WXM30056.1 | OG0000229 | CP148684.1:733696–734544 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY65_04195 | WXM30174.1 | OG0000234 | CP148684.1:867771–868949 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY65_10180 | WXM28394.1 | OG0000785 | CP148684.1:2167552–2167971 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY65_02160 | WXM29826.1 | OG0001124 | CP148684.1:474301–476898 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtWHY65_03445 | WXM30052.1 | OG0001394 | CP148684.1:729788–730570 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY65_00850 | WXM29611.1 | OG0001639 | CP148684.1:205696–206472 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.