Assembly
ASM3751480v1
BioProject PRJNA1087353 · BioSample SAMN40441230
GENOME-RESOLVED EVIDENCE
GCA_037514805.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3409388 bp · GC 28.500%
Completeness 96.090% · contamination 5.040%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY35_06925 | WXM33864.1 | OG0000061 | CP148690.1:1586335–1587687 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY35_00695 | WXM32673.1 | OG0000131 | CP148690.1:157486–158439 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY35_06915 | WXM33862.1 | OG0000212 | CP148690.1:1585410–1585901 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY35_13145 | WXM32198.1 | OG0000229 | CP148690.1:2939192–2940040 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY35_12525 | WXM32101.1 | OG0000234 | CP148690.1:2819725–2820903 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY35_06920 | WXM33863.1 | OG0000785 | CP148690.1:1585904–1586323 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY35_14445 | WXM32428.1 | OG0001124 | CP148690.1:3196875–3199472 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY35_01850 | WXM32886.1 | OG0001228 | CP148690.1:425410–426933 + | L-lactate permease [Clostridium perfringens] |
| crtWHY35_13165 | WXM32202.1 | OG0001394 | CP148690.1:2943167–2943949 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY35_00635 | WXM32661.1 | OG0001639 | CP148690.1:142057–142833 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.