Assembly
ASM3751644v1
BioProject PRJNA1087353 · BioSample SAMN40441228
GENOME-RESOLVED EVIDENCE
GCA_037516445.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3465326 bp · GC 28.500%
Completeness 98.160% · contamination 5.940%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY17_08040 | WXM37229.1 | OG0000061 | CP148701.1:1797938–1799290 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY17_01870 | WXM38922.1 | OG0000131 | CP148701.1:389224–390177 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY17_08030 | WXM37227.1 | OG0000212 | CP148701.1:1797013–1797504 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY17_14490 | WXM38450.1 | OG0000229 | CP148701.1:3200122–3200970 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY17_13815 | WXM38344.1 | OG0000234 | CP148701.1:3071395–3072573 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY17_08035 | WXM37228.1 | OG0000785 | CP148701.1:1797507–1797926 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY17_00430 | WXM38681.1 | OG0001124 | CP148701.1:92099–94696 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY17_03005 | WXM39133.1 | OG0001228 | CP148701.1:645794–647317 + | L-lactate permease [Clostridium perfringens] |
| crtWHY17_14510 | WXM38454.1 | OG0001394 | CP148701.1:3204096–3204878 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY17_01815 | WXM38911.1 | OG0001639 | CP148701.1:375460–376236 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.