Assembly
ASM3751743v1
BioProject PRJNA1087353 · BioSample SAMN40441227
GENOME-RESOLVED EVIDENCE
GCA_037517435.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3563670 bp · GC 28.500%
Completeness 96.830% · contamination 8.790%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY20_06615 | WXM42880.1 | OG0000061 | CP148705.1:1496468–1497820 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY20_00330 | WXM41671.1 | OG0000131 | CP148705.1:82103–83056 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY20_06605 | WXM42878.1 | OG0000212 | CP148705.1:1495543–1496034 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY20_13110 | WXM41206.1 | OG0000229 | CP148705.1:2904590–2905438 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY20_12395 | WXM41091.1 | OG0000234 | CP148705.1:2772623–2773801 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY20_06610 | WXM42879.1 | OG0000785 | CP148705.1:1496037–1496456 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY20_14420 | WXM41438.1 | OG0001124 | CP148705.1:3162124–3164721 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| rnfAWHY20_06565 | WXM42870.1 | OG0001328 | CP148705.1:1488896–1489471 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtWHY20_13130 | WXM41210.1 | OG0001394 | CP148705.1:2908564–2909346 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY20_00275 | WXM41660.1 | OG0001639 | CP148705.1:68423–69199 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.