Assembly
ASM3751854v1
BioProject PRJNA1087353 · BioSample SAMN40441226
GENOME-RESOLVED EVIDENCE
GCA_037518545.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3267004 bp · GC 28.500%
Completeness 96.320% · contamination 2.840%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHY29_06470 | WXM45937.1 | OG0000061 | CP148710.1:1478458–1479810 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhWHY29_00675 | WXM44828.1 | OG0000131 | CP148710.1:152182–153135 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBWHY29_06460 | WXM45935.1 | OG0000212 | CP148710.1:1477533–1478024 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdWHY29_12800 | WXM44368.1 | OG0000229 | CP148710.1:2859228–2860076 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlWHY29_12200 | WXM44275.1 | OG0000234 | CP148710.1:2743976–2745154 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZWHY29_06465 | WXM45936.1 | OG0000785 | CP148710.1:1478027–1478446 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEWHY29_14100 | WXM44599.1 | OG0001124 | CP148710.1:3116804–3119401 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPWHY29_01795 | WXM45037.1 | OG0001228 | CP148710.1:408975–410498 + | L-lactate permease [Clostridium perfringens] |
| crtWHY29_12820 | WXM44372.1 | OG0001394 | CP148710.1:2863203–2863985 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtWHY29_00635 | WXM44820.1 | OG0001639 | CP148710.1:141536–142312 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.